Replacing genome variant annotation, filtering and interpretation software

cn-standardContract or concession notice – standard regime00339113-2026SUStichting Amsterdam UMC
Estimated value€2,360,000
DeadlineExpired8 Jun 2026, 10:00
Competition00 participants
Lots11 lot

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Key information

Identifier
00339113-2026
Contract type
Deadline
8 Jun 2026, 10:00
CPV codes
48180000 - Medical software package
Status
Active
Notice type
cn-standardContract or concession notice – standard regime
Source
Estimated value
€2,360,000
Publication date
17 May 2026, 22:00

Overview

Data from the sequencer is processed through a bioinformatics pipeline (currently GATK, soon transitioning to DRAGEN), which outputs all possible variants relative to the reference genome in tabular form in a VCF file. This VCF file is imported into the software, where annotation first takes place: all valid variants are separated from invalid variants based on quality parameters. Because this results in a large number of variants, they are subsequently filtered based on laboratory defined criteria, such as genomic position, population frequency, known pathogenicity based on literature or insilico prediction tools. All remaining variants must then be interpreted using various tools/databases. The software supports the use and visualisation of data from these tools, enabling fast and efficient interpretation — including through an AI tool that proposes the most likely causal variant for the disorder. software will be used by more or less 200 personel for diagnostics and research purposes. estimated value is based on 8 years

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Timeline

13 May 2026, 15:20

Dispatch date

Milestone

17 May 2026, 22:00

Publication date

Publication

20 May 2026, 12:00

Additional information request deadline

Deadline

08 Jun 2026, 10:00

Submission deadline

Deadline

Version history

None recorded.

Contracting authorities1

SU

UNKNOWN 31644435

nlAMSTERDAM, Netherlands
[email protected]

Lots1

Documentation0

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Award criteria0

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Participants0

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